RNA Center Software


Pymol plugin for Euler-Rodriguez Transformation calculation of axis and angle or rotation (...save as)

example use of Euler-Rodriguez plugin (...save as)

Details for Euler-Rodriguez Transformation calculation of axis and angle or rotation


Pymol plugin for identifying domains (...save as)

PDBRestraint screenshot

PDB to Restraints

Webserver for generating Stacking and Base Pair restraints from a PDB coordinate file.

PDB Cones screenshot

PDB to pymol base pair cones

Webserver for generating cone type basepairs for pymol.

XRNA screenshot

XRNA

Java program for creating, manipulating and annotating secondary structure graphics.

XRNA2.0 screenshot

XRNA2.0

(Beta) Webserver for creating, manipulating and annotating secondary structure graphics. It can handle pseudoknots, multiple chains, insertions, deletions

Intronerator screenshot

Intronerator

A set of web-based tools for exploring RNA splicing and gene structure in Caenorhabditis elegans.

Yeast Intron screenshot

Ares lab Yeast Intron Database

Web database lookup tools.

RNA center image

Experimental Design and Optimization

Web interface for experimental design and optimization tools.

RNA center image

Sequence Logo Generator

Sequence Logo Generator, from PSWM or PSSM .