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XRNA Software

• XRNA Package
  • XRNA version 1.1.12 Beta (11/20/04)

  • XRNA version 1.2.0 Beta (3/29/09)
    • Unstable development branch
    • Adjusted minor resizing issues
    • Modern java libraries (1.6)
    • Different postscript library
    • Source Code (eclipse workspace directory)
    • Known issues:
      • jpg on macs comes out black
      • postscript printing queries all networked printers before completing. workaround: Disable/remove all unused printers.

  • perl converter from ss to xrna format (4/30/09)
    (right click, save as, and run from command line)

  
  
• Java Installers
  
  Windows 2000/XP
  • Java Runtime Environment 1.4.2
  • Java3D OpenGL API 1.3.1
  • Java Advanced Imaging 1.1.2
  
  Linux
  • Java Runtime Environment 1.4.2
  • Java3D OpenGL API 1.3.1
  • Java Advanced Imaging 1.1.2

RNA Secondary Structure Files

• Escherichia coli
  • e.coli_5s.xrna
  • e.coli_5s.fa
  • e.coli_16s.xrna
  • e.coli_16s.fa
  • e.coli_23s.xrna
  • e.coli_23s.fa
  • e.coli_23s.5p.xrna
  • e.coli_23s.3p.xrna
  
  
• Thermus thermophilus
  • thermus_5s.xrna
  • thermus_5s.fa
  • thermus_23s.xrna
  • thermus_23s.fa
  • thermus_23s.5p.xrna
  • thermus_23s.3p.xrna
  • thermus_23s_template.xrna
  
  
• Tetrahymena
  • Tet.t.ref.xrna
  
  
• Phenylalanine Yeast tRNA
  • trna_phe_yeast.xrna